.. AUTO-GENERATED FILE -- DO NOT EDIT! :mod:`core` =========== .. automodule:: dipy.core .. currentmodule:: dipy.core .. autosummary:: test .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.geometry` ---------------------------- .. automodule:: dipy.core.geometry .. currentmodule:: dipy.core.geometry .. autosummary:: cart2sphere cart_distance circumradius compose_matrix compose_transformations decompose_matrix dist_to_corner euler_matrix is_hemispherical lambert_equal_area_projection_cart lambert_equal_area_projection_polar nearest_pos_semi_def normalized_vector perpendicular_directions rodrigues_axis_rotation sph2latlon sphere2cart sphere_distance vec2vec_rotmat vector_cosine vector_norm .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.gradients` ----------------------------- .. automodule:: dipy.core.gradients .. currentmodule:: dipy.core.gradients .. autosummary:: GradientTable HemiSphere auto_attr check_multi_b disperse_charges generate_bvecs gradient_table gradient_table_from_bvals_bvecs gradient_table_from_gradient_strength_bvecs gradient_table_from_qvals_bvecs inv polar reorient_bvecs round_bvals unique_bvals vector_norm warn .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.graph` ------------------------- .. automodule:: dipy.core.graph .. currentmodule:: dipy.core.graph .. autosummary:: Graph .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.histeq` -------------------------- .. automodule:: dipy.core.histeq .. currentmodule:: dipy.core.histeq .. autosummary:: histeq .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.ndindex` --------------------------- .. automodule:: dipy.core.ndindex .. currentmodule:: dipy.core.ndindex .. autosummary:: as_strided ndindex .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.onetime` --------------------------- .. automodule:: dipy.core.onetime .. currentmodule:: dipy.core.onetime .. autosummary:: OneTimeProperty ResetMixin auto_attr .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.optimize` ---------------------------- .. automodule:: dipy.core.optimize .. currentmodule:: dipy.core.optimize .. autosummary:: NonNegativeLeastSquares Optimizer SKLearnLinearSolver minimize sparse_nnls spdot .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.profile` --------------------------- .. automodule:: dipy.core.profile .. currentmodule:: dipy.core.profile .. autosummary:: Profiler optional_package .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.rng` ----------------------- .. automodule:: dipy.core.rng .. currentmodule:: dipy.core.rng .. autosummary:: LEcuyer WichmannHill1982 WichmannHill2006 architecture floor .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.sphere` -------------------------- .. automodule:: dipy.core.sphere .. currentmodule:: dipy.core.sphere .. autosummary:: HemiSphere Sphere auto_attr cart2sphere disperse_charges euler_characteristic_check faces_from_sphere_vertices remove_similar_vertices sphere2cart unique_edges unique_sets vector_norm .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.sphere_stats` -------------------------------- .. automodule:: dipy.core.sphere_stats .. currentmodule:: dipy.core.sphere_stats .. autosummary:: permutations angular_similarity compare_orientation_sets eigenstats random_uniform_on_sphere .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.subdivide_octahedron` ---------------------------------------- .. automodule:: dipy.core.subdivide_octahedron .. currentmodule:: dipy.core.subdivide_octahedron .. autosummary:: HemiSphere create_unit_hemisphere create_unit_sphere .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`core.wavelet` --------------------------- .. automodule:: dipy.core.wavelet .. currentmodule:: dipy.core.wavelet .. autosummary:: afb3D afb3D_A cshift3D dwt3D idwt3D permutationinverse sfb3D sfb3D_A .. currentmodule:: dipy.core test ~~~~ .. autofunction:: test .. currentmodule:: dipy.core.geometry cart2sphere ~~~~~~~~~~~ .. autofunction:: cart2sphere cart_distance ~~~~~~~~~~~~~ .. autofunction:: cart_distance circumradius ~~~~~~~~~~~~ .. autofunction:: circumradius compose_matrix ~~~~~~~~~~~~~~ .. autofunction:: compose_matrix compose_transformations ~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: compose_transformations decompose_matrix ~~~~~~~~~~~~~~~~ .. autofunction:: decompose_matrix dist_to_corner ~~~~~~~~~~~~~~ .. autofunction:: dist_to_corner euler_matrix ~~~~~~~~~~~~ .. autofunction:: euler_matrix is_hemispherical ~~~~~~~~~~~~~~~~ .. autofunction:: is_hemispherical lambert_equal_area_projection_cart ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: lambert_equal_area_projection_cart lambert_equal_area_projection_polar ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: lambert_equal_area_projection_polar nearest_pos_semi_def ~~~~~~~~~~~~~~~~~~~~ .. autofunction:: nearest_pos_semi_def normalized_vector ~~~~~~~~~~~~~~~~~ .. autofunction:: normalized_vector perpendicular_directions ~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: perpendicular_directions rodrigues_axis_rotation ~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: rodrigues_axis_rotation sph2latlon ~~~~~~~~~~ .. autofunction:: sph2latlon sphere2cart ~~~~~~~~~~~ .. autofunction:: sphere2cart sphere_distance ~~~~~~~~~~~~~~~ .. autofunction:: sphere_distance vec2vec_rotmat ~~~~~~~~~~~~~~ .. autofunction:: vec2vec_rotmat vector_cosine ~~~~~~~~~~~~~ .. autofunction:: vector_cosine vector_norm ~~~~~~~~~~~ .. autofunction:: vector_norm .. currentmodule:: dipy.core.gradients :class:`GradientTable` ~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: GradientTable :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`HemiSphere` ~~~~~~~~~~~~~~~~~~~ .. autoclass:: HemiSphere :members: :undoc-members: :show-inheritance: .. automethod:: __init__ auto_attr ~~~~~~~~~ .. autofunction:: auto_attr check_multi_b ~~~~~~~~~~~~~ .. autofunction:: check_multi_b disperse_charges ~~~~~~~~~~~~~~~~ .. autofunction:: disperse_charges generate_bvecs ~~~~~~~~~~~~~~ .. autofunction:: generate_bvecs gradient_table ~~~~~~~~~~~~~~ .. autofunction:: gradient_table gradient_table_from_bvals_bvecs ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: gradient_table_from_bvals_bvecs gradient_table_from_gradient_strength_bvecs ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: gradient_table_from_gradient_strength_bvecs gradient_table_from_qvals_bvecs ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: gradient_table_from_qvals_bvecs inv ~~~ .. autofunction:: inv polar ~~~~~ .. autofunction:: polar reorient_bvecs ~~~~~~~~~~~~~~ .. autofunction:: reorient_bvecs round_bvals ~~~~~~~~~~~ .. autofunction:: round_bvals unique_bvals ~~~~~~~~~~~~ .. autofunction:: unique_bvals vector_norm ~~~~~~~~~~~ .. autofunction:: vector_norm warn ~~~~ .. autofunction:: warn .. currentmodule:: dipy.core.graph :class:`Graph` ~~~~~~~~~~~~~~ .. autoclass:: Graph :members: :undoc-members: :show-inheritance: .. automethod:: __init__ .. currentmodule:: dipy.core.histeq histeq ~~~~~~ .. autofunction:: histeq .. currentmodule:: dipy.core.ndindex as_strided ~~~~~~~~~~ .. autofunction:: as_strided ndindex ~~~~~~~ .. autofunction:: ndindex .. currentmodule:: dipy.core.onetime :class:`OneTimeProperty` ~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: OneTimeProperty :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ResetMixin` ~~~~~~~~~~~~~~~~~~~ .. autoclass:: ResetMixin :members: :undoc-members: :show-inheritance: .. automethod:: __init__ auto_attr ~~~~~~~~~ .. autofunction:: auto_attr .. currentmodule:: dipy.core.optimize :class:`NonNegativeLeastSquares` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: NonNegativeLeastSquares :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Optimizer` ~~~~~~~~~~~~~~~~~~ .. autoclass:: Optimizer :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`SKLearnLinearSolver` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: SKLearnLinearSolver :members: :undoc-members: :show-inheritance: .. automethod:: __init__ minimize ~~~~~~~~ .. autofunction:: minimize sparse_nnls ~~~~~~~~~~~ .. autofunction:: sparse_nnls spdot ~~~~~ .. autofunction:: spdot .. currentmodule:: dipy.core.profile :class:`Profiler` ~~~~~~~~~~~~~~~~~ .. autoclass:: Profiler :members: :undoc-members: :show-inheritance: .. automethod:: __init__ optional_package ~~~~~~~~~~~~~~~~ .. autofunction:: optional_package .. currentmodule:: dipy.core.rng LEcuyer ~~~~~~~ .. autofunction:: LEcuyer WichmannHill1982 ~~~~~~~~~~~~~~~~ .. autofunction:: WichmannHill1982 WichmannHill2006 ~~~~~~~~~~~~~~~~ .. autofunction:: WichmannHill2006 architecture ~~~~~~~~~~~~ .. autofunction:: architecture floor ~~~~~ .. autofunction:: floor .. currentmodule:: dipy.core.sphere :class:`HemiSphere` ~~~~~~~~~~~~~~~~~~~ .. autoclass:: HemiSphere :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Sphere` ~~~~~~~~~~~~~~~ .. autoclass:: Sphere :members: :undoc-members: :show-inheritance: .. automethod:: __init__ auto_attr ~~~~~~~~~ .. autofunction:: auto_attr cart2sphere ~~~~~~~~~~~ .. autofunction:: cart2sphere disperse_charges ~~~~~~~~~~~~~~~~ .. autofunction:: disperse_charges euler_characteristic_check ~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: euler_characteristic_check faces_from_sphere_vertices ~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: faces_from_sphere_vertices remove_similar_vertices ~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: remove_similar_vertices sphere2cart ~~~~~~~~~~~ .. autofunction:: sphere2cart unique_edges ~~~~~~~~~~~~ .. autofunction:: unique_edges unique_sets ~~~~~~~~~~~ .. autofunction:: unique_sets vector_norm ~~~~~~~~~~~ .. autofunction:: vector_norm .. currentmodule:: dipy.core.sphere_stats :class:`permutations` ~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: permutations :members: :undoc-members: :show-inheritance: .. automethod:: __init__ angular_similarity ~~~~~~~~~~~~~~~~~~ .. autofunction:: angular_similarity compare_orientation_sets ~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: compare_orientation_sets eigenstats ~~~~~~~~~~ .. autofunction:: eigenstats random_uniform_on_sphere ~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: random_uniform_on_sphere .. currentmodule:: dipy.core.subdivide_octahedron :class:`HemiSphere` ~~~~~~~~~~~~~~~~~~~ .. autoclass:: HemiSphere :members: :undoc-members: :show-inheritance: .. automethod:: __init__ create_unit_hemisphere ~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: create_unit_hemisphere create_unit_sphere ~~~~~~~~~~~~~~~~~~ .. autofunction:: create_unit_sphere .. currentmodule:: dipy.core.wavelet afb3D ~~~~~ .. autofunction:: afb3D afb3D_A ~~~~~~~ .. autofunction:: afb3D_A cshift3D ~~~~~~~~ .. autofunction:: cshift3D dwt3D ~~~~~ .. autofunction:: dwt3D idwt3D ~~~~~~ .. autofunction:: idwt3D permutationinverse ~~~~~~~~~~~~~~~~~~ .. autofunction:: permutationinverse sfb3D ~~~~~ .. autofunction:: sfb3D sfb3D_A ~~~~~~~ .. autofunction:: sfb3D_A