.. AUTO-GENERATED FILE -- DO NOT EDIT! :mod:`workflows` ================ .. automodule:: dipy.workflows .. currentmodule:: dipy.workflows .. autosummary:: .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.align` ------------------------------ .. automodule:: dipy.workflows.align .. currentmodule:: dipy.workflows.align .. autosummary:: AffineMap AffineRegistration AffineTransform3D ApplyTransformFlow CCMetric DiffeomorphicMap EMMetric ImageRegistrationFlow MutualInformationMetric ResliceFlow RigidTransform3D SSDMetric SlrWithQbxFlow SymmetricDiffeomorphicRegistration SynRegistrationFlow TranslationTransform3D Workflow check_dimensions load_nifti reslice save_nifti save_qa_metric slr_with_qbx transform_centers_of_mass transform_streamlines .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.base` ----------------------------- .. automodule:: dipy.workflows.base .. currentmodule:: dipy.workflows.base .. autosummary:: IntrospectiveArgumentParser NumpyDocString get_args_default .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.combined_workflow` ------------------------------------------ .. automodule:: dipy.workflows.combined_workflow .. currentmodule:: dipy.workflows.combined_workflow .. autosummary:: CombinedWorkflow Workflow .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.denoise` -------------------------------- .. automodule:: dipy.workflows.denoise .. currentmodule:: dipy.workflows.denoise .. autosummary:: NLMeansFlow Workflow estimate_sigma load_nifti nlmeans save_nifti .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.docstring_parser` ----------------------------------------- .. automodule:: dipy.workflows.docstring_parser .. currentmodule:: dipy.workflows.docstring_parser .. autosummary:: NumpyDocString Reader dedent_lines warn .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.flow_runner` ------------------------------------ .. automodule:: dipy.workflows.flow_runner .. currentmodule:: dipy.workflows.flow_runner .. autosummary:: IntrospectiveArgumentParser get_level run_flow .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.io` --------------------------- .. automodule:: dipy.workflows.io .. currentmodule:: dipy.workflows.io .. autosummary:: FetchFlow IoInfoFlow Workflow getfullargspec getmembers isfunction load_nifti .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.mask` ----------------------------- .. automodule:: dipy.workflows.mask .. currentmodule:: dipy.workflows.mask .. autosummary:: MaskFlow Workflow load_nifti save_nifti .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.multi_io` --------------------------------- .. automodule:: dipy.workflows.multi_io .. currentmodule:: dipy.workflows.multi_io .. autosummary:: IOIterator basename_without_extension common_start concatenate_inputs connect_output_paths get_args_default glob io_iterator io_iterator_ slash_to_under .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.reconst` -------------------------------- .. automodule:: dipy.workflows.reconst .. currentmodule:: dipy.workflows.reconst .. autosummary:: ConstrainedSphericalDeconvModel CsaOdfModel DiffusionKurtosisModel ReconstCSAFlow ReconstCSDFlow ReconstDkiFlow ReconstDtiFlow ReconstIvimFlow ReconstMAPMRIFlow TensorModel Workflow IvimModel auto_response axial_diffusivity color_fa fractional_anisotropy geodesic_anisotropy get_mode gradient_table literal_eval load_nifti lower_triangular mean_diffusivity nifti1_symmat peaks_from_model peaks_to_niftis radial_diffusivity read_bvals_bvecs save_nifti save_peaks split_dki_param warn .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.segment` -------------------------------- .. automodule:: dipy.workflows.segment .. currentmodule:: dipy.workflows.segment .. autosummary:: LabelsBundlesFlow MedianOtsuFlow RecoBundles RecoBundlesFlow Workflow load_nifti median_otsu save_nifti time .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.stats` ------------------------------ .. automodule:: dipy.workflows.stats .. currentmodule:: dipy.workflows.stats .. autosummary:: BundleAnalysisPopulationFlow LinearMixedModelsFlow SNRinCCFlow TensorModel Workflow binary_dilation bounding_box bundle_analysis gradient_table load_nifti median_otsu optional_package read_bvals_bvecs save_nifti segment_from_cfa simple_plot .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.tracking` --------------------------------- .. automodule:: dipy.workflows.tracking .. currentmodule:: dipy.workflows.tracking .. autosummary:: BinaryStoppingCriterion ClosestPeakDirectionGetter CmcStoppingCriterion DeterministicMaximumDirectionGetter LocalFiberTrackingPAMFlow LocalTracking PFTrackingPAMFlow ParticleFilteringTracking ProbabilisticDirectionGetter Space StatefulTractogram ThresholdStoppingCriterion Workflow load_nifti load_peaks save_tractogram .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.viz` ---------------------------- .. automodule:: dipy.workflows.viz .. currentmodule:: dipy.workflows.viz .. autosummary:: Dpy HorizonFlow Workflow horizon load_nifti load_peaks pjoin .. AUTO-GENERATED FILE -- DO NOT EDIT! Module: :mod:`workflows.workflow` --------------------------------- .. automodule:: dipy.workflows.workflow .. currentmodule:: dipy.workflows.workflow .. autosummary:: Workflow io_iterator_ .. currentmodule:: dipy.workflows .. currentmodule:: dipy.workflows.align :class:`AffineMap` ~~~~~~~~~~~~~~~~~~ .. autoclass:: AffineMap :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`AffineRegistration` ~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: AffineRegistration :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`AffineTransform3D` ~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: AffineTransform3D :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ApplyTransformFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ApplyTransformFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`CCMetric` ~~~~~~~~~~~~~~~~~ .. autoclass:: CCMetric :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`DiffeomorphicMap` ~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: DiffeomorphicMap :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`EMMetric` ~~~~~~~~~~~~~~~~~ .. autoclass:: EMMetric :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ImageRegistrationFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ImageRegistrationFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`MutualInformationMetric` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: MutualInformationMetric :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ResliceFlow` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ResliceFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`RigidTransform3D` ~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: RigidTransform3D :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`SSDMetric` ~~~~~~~~~~~~~~~~~~ .. autoclass:: SSDMetric :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`SlrWithQbxFlow` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: SlrWithQbxFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`SymmetricDiffeomorphicRegistration` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: SymmetricDiffeomorphicRegistration :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`SynRegistrationFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: SynRegistrationFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`TranslationTransform3D` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: TranslationTransform3D :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ check_dimensions ~~~~~~~~~~~~~~~~ .. autofunction:: check_dimensions load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti reslice ~~~~~~~ .. autofunction:: reslice save_nifti ~~~~~~~~~~ .. autofunction:: save_nifti save_qa_metric ~~~~~~~~~~~~~~ .. autofunction:: save_qa_metric slr_with_qbx ~~~~~~~~~~~~ .. autofunction:: slr_with_qbx transform_centers_of_mass ~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: transform_centers_of_mass transform_streamlines ~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: transform_streamlines .. currentmodule:: dipy.workflows.base :class:`IntrospectiveArgumentParser` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: IntrospectiveArgumentParser :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`NumpyDocString` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: NumpyDocString :members: :undoc-members: :show-inheritance: .. automethod:: __init__ get_args_default ~~~~~~~~~~~~~~~~ .. autofunction:: get_args_default .. currentmodule:: dipy.workflows.combined_workflow :class:`CombinedWorkflow` ~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: CombinedWorkflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ .. currentmodule:: dipy.workflows.denoise :class:`NLMeansFlow` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: NLMeansFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ estimate_sigma ~~~~~~~~~~~~~~ .. autofunction:: estimate_sigma load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti nlmeans ~~~~~~~ .. autofunction:: nlmeans save_nifti ~~~~~~~~~~ .. autofunction:: save_nifti .. currentmodule:: dipy.workflows.docstring_parser :class:`NumpyDocString` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: NumpyDocString :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Reader` ~~~~~~~~~~~~~~~ .. autoclass:: Reader :members: :undoc-members: :show-inheritance: .. automethod:: __init__ dedent_lines ~~~~~~~~~~~~ .. autofunction:: dedent_lines warn ~~~~ .. autofunction:: warn .. currentmodule:: dipy.workflows.flow_runner :class:`IntrospectiveArgumentParser` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: IntrospectiveArgumentParser :members: :undoc-members: :show-inheritance: .. automethod:: __init__ get_level ~~~~~~~~~ .. autofunction:: get_level run_flow ~~~~~~~~ .. autofunction:: run_flow .. currentmodule:: dipy.workflows.io :class:`FetchFlow` ~~~~~~~~~~~~~~~~~~ .. autoclass:: FetchFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`IoInfoFlow` ~~~~~~~~~~~~~~~~~~~ .. autoclass:: IoInfoFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ getfullargspec ~~~~~~~~~~~~~~ .. autofunction:: getfullargspec getmembers ~~~~~~~~~~ .. autofunction:: getmembers isfunction ~~~~~~~~~~ .. autofunction:: isfunction load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti .. currentmodule:: dipy.workflows.mask :class:`MaskFlow` ~~~~~~~~~~~~~~~~~ .. autoclass:: MaskFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti save_nifti ~~~~~~~~~~ .. autofunction:: save_nifti .. currentmodule:: dipy.workflows.multi_io :class:`IOIterator` ~~~~~~~~~~~~~~~~~~~ .. autoclass:: IOIterator :members: :undoc-members: :show-inheritance: .. automethod:: __init__ basename_without_extension ~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: basename_without_extension common_start ~~~~~~~~~~~~ .. autofunction:: common_start concatenate_inputs ~~~~~~~~~~~~~~~~~~ .. autofunction:: concatenate_inputs connect_output_paths ~~~~~~~~~~~~~~~~~~~~ .. autofunction:: connect_output_paths get_args_default ~~~~~~~~~~~~~~~~ .. autofunction:: get_args_default glob ~~~~ .. autofunction:: glob io_iterator ~~~~~~~~~~~ .. autofunction:: io_iterator io_iterator_ ~~~~~~~~~~~~ .. autofunction:: io_iterator_ slash_to_under ~~~~~~~~~~~~~~ .. autofunction:: slash_to_under .. currentmodule:: dipy.workflows.reconst :class:`ConstrainedSphericalDeconvModel` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ConstrainedSphericalDeconvModel :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`CsaOdfModel` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: CsaOdfModel :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`DiffusionKurtosisModel` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: DiffusionKurtosisModel :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ReconstCSAFlow` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ReconstCSAFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ReconstCSDFlow` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ReconstCSDFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ReconstDkiFlow` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ReconstDkiFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ReconstDtiFlow` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ReconstDtiFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ReconstIvimFlow` ~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ReconstIvimFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ReconstMAPMRIFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ReconstMAPMRIFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`TensorModel` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: TensorModel :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ IvimModel ~~~~~~~~~ .. autofunction:: IvimModel auto_response ~~~~~~~~~~~~~ .. autofunction:: auto_response axial_diffusivity ~~~~~~~~~~~~~~~~~ .. autofunction:: axial_diffusivity color_fa ~~~~~~~~ .. autofunction:: color_fa fractional_anisotropy ~~~~~~~~~~~~~~~~~~~~~ .. autofunction:: fractional_anisotropy geodesic_anisotropy ~~~~~~~~~~~~~~~~~~~ .. autofunction:: geodesic_anisotropy get_mode ~~~~~~~~ .. autofunction:: get_mode gradient_table ~~~~~~~~~~~~~~ .. autofunction:: gradient_table literal_eval ~~~~~~~~~~~~ .. autofunction:: literal_eval load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti lower_triangular ~~~~~~~~~~~~~~~~ .. autofunction:: lower_triangular mean_diffusivity ~~~~~~~~~~~~~~~~ .. autofunction:: mean_diffusivity nifti1_symmat ~~~~~~~~~~~~~ .. autofunction:: nifti1_symmat peaks_from_model ~~~~~~~~~~~~~~~~ .. autofunction:: peaks_from_model peaks_to_niftis ~~~~~~~~~~~~~~~ .. autofunction:: peaks_to_niftis radial_diffusivity ~~~~~~~~~~~~~~~~~~ .. autofunction:: radial_diffusivity read_bvals_bvecs ~~~~~~~~~~~~~~~~ .. autofunction:: read_bvals_bvecs save_nifti ~~~~~~~~~~ .. autofunction:: save_nifti save_peaks ~~~~~~~~~~ .. autofunction:: save_peaks split_dki_param ~~~~~~~~~~~~~~~ .. autofunction:: split_dki_param warn ~~~~ .. autofunction:: warn .. currentmodule:: dipy.workflows.segment :class:`LabelsBundlesFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: LabelsBundlesFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`MedianOtsuFlow` ~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: MedianOtsuFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`RecoBundles` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: RecoBundles :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`RecoBundlesFlow` ~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: RecoBundlesFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti median_otsu ~~~~~~~~~~~ .. autofunction:: median_otsu save_nifti ~~~~~~~~~~ .. autofunction:: save_nifti time ~~~~ .. autofunction:: time .. currentmodule:: dipy.workflows.stats :class:`BundleAnalysisPopulationFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: BundleAnalysisPopulationFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`LinearMixedModelsFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: LinearMixedModelsFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`SNRinCCFlow` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: SNRinCCFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`TensorModel` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: TensorModel :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ binary_dilation ~~~~~~~~~~~~~~~ .. autofunction:: binary_dilation bounding_box ~~~~~~~~~~~~ .. autofunction:: bounding_box bundle_analysis ~~~~~~~~~~~~~~~ .. autofunction:: bundle_analysis gradient_table ~~~~~~~~~~~~~~ .. autofunction:: gradient_table load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti median_otsu ~~~~~~~~~~~ .. autofunction:: median_otsu optional_package ~~~~~~~~~~~~~~~~ .. autofunction:: optional_package read_bvals_bvecs ~~~~~~~~~~~~~~~~ .. autofunction:: read_bvals_bvecs save_nifti ~~~~~~~~~~ .. autofunction:: save_nifti segment_from_cfa ~~~~~~~~~~~~~~~~ .. autofunction:: segment_from_cfa simple_plot ~~~~~~~~~~~ .. autofunction:: simple_plot .. currentmodule:: dipy.workflows.tracking :class:`BinaryStoppingCriterion` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: BinaryStoppingCriterion :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ClosestPeakDirectionGetter` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ClosestPeakDirectionGetter :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`CmcStoppingCriterion` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: CmcStoppingCriterion :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`DeterministicMaximumDirectionGetter` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: DeterministicMaximumDirectionGetter :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`LocalFiberTrackingPAMFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: LocalFiberTrackingPAMFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`LocalTracking` ~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: LocalTracking :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`PFTrackingPAMFlow` ~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: PFTrackingPAMFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ParticleFilteringTracking` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ParticleFilteringTracking :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ProbabilisticDirectionGetter` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ProbabilisticDirectionGetter :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Space` ~~~~~~~~~~~~~~ .. autoclass:: Space :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`StatefulTractogram` ~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: StatefulTractogram :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`ThresholdStoppingCriterion` ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. autoclass:: ThresholdStoppingCriterion :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti load_peaks ~~~~~~~~~~ .. autofunction:: load_peaks save_tractogram ~~~~~~~~~~~~~~~ .. autofunction:: save_tractogram .. currentmodule:: dipy.workflows.viz :class:`Dpy` ~~~~~~~~~~~~ .. autoclass:: Dpy :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`HorizonFlow` ~~~~~~~~~~~~~~~~~~~~ .. autoclass:: HorizonFlow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ horizon ~~~~~~~ .. autofunction:: horizon load_nifti ~~~~~~~~~~ .. autofunction:: load_nifti load_peaks ~~~~~~~~~~ .. autofunction:: load_peaks pjoin ~~~~~ .. autofunction:: pjoin .. currentmodule:: dipy.workflows.workflow :class:`Workflow` ~~~~~~~~~~~~~~~~~ .. autoclass:: Workflow :members: :undoc-members: :show-inheritance: .. automethod:: __init__ io_iterator_ ~~~~~~~~~~~~ .. autofunction:: io_iterator_