.. _release0.11: ==================================== Release notes for DIPY version 0.11 ==================================== GitHub stats for 2015/12/03 - 2016/02/21 (tag: 0.10) The following 16 authors contributed 271 commits. * Ariel Rokem * Bago Amirbekian * Bishakh Ghosh * Eleftherios Garyfallidis * Gabriel Girard * Gregory R. Lee * Himanshu Mishra * Jean-Christophe Houde * Marc-Alexandre Côté * Matthew Brett * Matthieu Dumont * Omar Ocegueda * Sagun Pai * Samuel St-Jean * Stephan Meesters * Vatsala Swaroop We closed a total of 144 issues, 55 pull requests and 89 regular issues; this is the full list (generated with the script :file:`tools/github_stats.py`): Pull Requests (55): * :ghpull:`933`: Updating release dates * :ghpull:`925`: fix typos * :ghpull:`915`: BF: correct handling of output paths in dipy_quickbundles. * :ghpull:`922`: Fix PEP8 in top-level tests * :ghpull:`921`: fix typo * :ghpull:`918`: Fix PEP8 in test_expectmax * :ghpull:`917`: Website 0.11 update and more devs * :ghpull:`916`: Getting website ready for 0.11 release * :ghpull:`914`: DOC: Update release notes for 0.11 * :ghpull:`910`: Singleton sl vals * :ghpull:`908`: Fix pep8 errors in viz * :ghpull:`911`: fix typo * :ghpull:`904`: fix typo * :ghpull:`851`: Tissue Classifier tracking example - changed seeding mask to wm only voxels * :ghpull:`858`: Updates for upcoming numpy 1.11 release * :ghpull:`856`: Add reference to gitter chat room in the README * :ghpull:`762`: Contextual enhancements of ODF/FOD fields * :ghpull:`857`: DTI memory: use the same step in prediction as you use in fitting. * :ghpull:`816`: A few fixes to SFM. * :ghpull:`811`: Extract values from an image based on streamline coordinates. * :ghpull:`853`: miscellaneous Python 3 compatibility problem fixes in fvtk * :ghpull:`849`: nlmeans use num threads option in 3d * :ghpull:`850`: DOC: fix typo * :ghpull:`848`: DOC: fix typo * :ghpull:`847`: DOC: fix typo * :ghpull:`845`: DOC: Add kurtosis example to examples_index * :ghpull:`846`: DOC: fix typo * :ghpull:`826`: Return numpy arrays instead of memory views from cython functions * :ghpull:`841`: Rename CONTRIBUTING to CONTRIBUTING.md * :ghpull:`839`: DOC: Fix up the docstring for the CENIR data * :ghpull:`819`: DOC: Add the DKI reconstruction example to the list of valid examples. * :ghpull:`843`: Drop 3.2 * :ghpull:`838`: "Contributing" * :ghpull:`833`: Doc: Typo * :ghpull:`817`: RF: Convert nan values in bvectors to 0's * :ghpull:`836`: fixed typo * :ghpull:`695`: Introducing workflows * :ghpull:`829`: Fixes issue #813 by not checking data type explicitly. * :ghpull:`830`: Fixed doc of SDT * :ghpull:`825`: Updated toollib and doc tools (#802) * :ghpull:`760`: NF - random seeds from mask * :ghpull:`824`: Updated copyright to 2016 * :ghpull:`815`: DOC: The previous link doesn't exist anymore. * :ghpull:`669`: Function to reorient gradient directions according to moco parameters * :ghpull:`809`: MRG: refactor and test setup.py * :ghpull:`821`: BF: revert accidentally committed COMMIT_INFO.txt * :ghpull:`818`: Round coords life * :ghpull:`797`: Update csdeconv.py * :ghpull:`806`: Relax regression tests * :ghpull:`814`: TEST: compare array shapes directly * :ghpull:`808`: MRG: pull in discarded changes from maintenance * :ghpull:`745`: faster version of piesno * :ghpull:`807`: BF: fix shebang lines for scripts * :ghpull:`794`: RF: Allow setting the verbosity of the AffineRegistration while running it * :ghpull:`801`: TST: add Python 3.5 to travis-ci test matrix Issues (89): * :ghissue:`933`: Updating release dates * :ghissue:`925`: fix typos * :ghissue:`915`: BF: correct handling of output paths in dipy_quickbundles. * :ghissue:`922`: Fix PEP8 in top-level tests * :ghissue:`886`: PEP8 in top-level tests * :ghissue:`921`: fix typo * :ghissue:`918`: Fix PEP8 in test_expectmax * :ghissue:`863`: PEP8 in test_expectmax * :ghissue:`919`: STYLE:PEP8 workflows * :ghissue:`896`: STYLE: PEP8 for workflows folder * :ghissue:`917`: Website 0.11 update and more devs * :ghissue:`900`: SLR example needs updating * :ghissue:`906`: Compiling the website needs too much memory * :ghissue:`916`: Getting website ready for 0.11 release * :ghissue:`914`: DOC: Update release notes for 0.11 * :ghissue:`910`: Singleton sl vals * :ghissue:`908`: Fix pep8 errors in viz * :ghissue:`890`: PEP8 in viz * :ghissue:`911`: fix typo * :ghissue:`905`: math is broken in doc * :ghissue:`904`: fix typo * :ghissue:`851`: Tissue Classifier tracking example - changed seeding mask to wm only voxels * :ghissue:`858`: Updates for upcoming numpy 1.11 release * :ghissue:`856`: Add reference to gitter chat room in the README * :ghissue:`762`: Contextual enhancements of ODF/FOD fields * :ghissue:`857`: DTI memory: use the same step in prediction as you use in fitting. * :ghissue:`816`: A few fixes to SFM. * :ghissue:`898`: Pep8 #891 * :ghissue:`811`: Extract values from an image based on streamline coordinates. * :ghissue:`892`: PEP8 workflows * :ghissue:`894`: PEP8 utils * :ghissue:`895`: PEP8 Tracking * :ghissue:`893`: PEP8 Viz * :ghissue:`860`: Added Travis-CI badge * :ghissue:`692`: Refactor fetcher.py * :ghissue:`742`: LinAlgError on tracking quickstart, with python 3.4 * :ghissue:`822`: Could you help me ? "URLError：" * :ghissue:`840`: Make dti reconst less memory hungry * :ghissue:`855`: 0.9.3rc * :ghissue:`853`: miscellaneous Python 3 compatibility problem fixes in fvtk * :ghissue:`849`: nlmeans use num threads option in 3d * :ghissue:`850`: DOC: fix typo * :ghissue:`848`: DOC: fix typo * :ghissue:`153`: DiffusionSpectrumModel assumes 1 b0 and fails with data with more than 1 b0 * :ghissue:`93`: GradientTable mask does not account for nan's in b-values * :ghissue:`665`: Online tutorial of quickbundles does not work for released version on macosx * :ghissue:`758`: One viz test still failing on mac os * :ghissue:`847`: DOC: fix typo * :ghissue:`845`: DOC: Add kurtosis example to examples_index * :ghissue:`846`: DOC: fix typo * :ghissue:`826`: Return numpy arrays instead of memory views from cython functions * :ghissue:`841`: Rename CONTRIBUTING to CONTRIBUTING.md * :ghissue:`839`: DOC: Fix up the docstring for the CENIR data * :ghissue:`842`: New pip fails on 3.2 * :ghissue:`819`: DOC: Add the DKI reconstruction example to the list of valid examples. * :ghissue:`843`: Drop 3.2 * :ghissue:`838`: "Contributing" * :ghissue:`833`: Doc: Typo * :ghissue:`817`: RF: Convert nan values in bvectors to 0's * :ghissue:`836`: fixed typo * :ghissue:`695`: Introducing workflows * :ghissue:`829`: Fixes issue #813 by not checking data type explicitly. * :ghissue:`805`: Multiple failures on Windows Python 3.5 build * :ghissue:`802`: toollib and doc tools need update to 3.5 * :ghissue:`812`: Python 2.7 doctest failures on 64-bit Windows * :ghissue:`685`: (WIP) DKI PR5 - NF: DKI-ODF estimation * :ghissue:`830`: Fixed doc of SDT * :ghissue:`825`: Updated toollib and doc tools (#802) * :ghissue:`760`: NF - random seeds from mask * :ghissue:`824`: Updated copyright to 2016 * :ghissue:`666`: Parallelized local tracking branch so now you can actually look at my code :) * :ghissue:`815`: DOC: The previous link doesn't exist anymore. * :ghissue:`747`: TEST: make test faster * :ghissue:`631`: NF - multiprocessing multi voxel fit * :ghissue:`669`: Function to reorient gradient directions according to moco parameters * :ghissue:`809`: MRG: refactor and test setup.py * :ghissue:`820`: dipy.get_info() returns wrong commit hash * :ghissue:`821`: BF: revert accidentally committed COMMIT_INFO.txt * :ghissue:`818`: Round coords life * :ghissue:`810`: Wrong input type for `_voxel2stream` on 64-bit Windows * :ghissue:`803`: Windows 7 Pro VM Python 2.7 gives 5 test errors with latest release 0.10.1 * :ghissue:`797`: Update csdeconv.py * :ghissue:`806`: Relax regression tests * :ghissue:`814`: TEST: compare array shapes directly * :ghissue:`808`: MRG: pull in discarded changes from maintenance * :ghissue:`745`: faster version of piesno * :ghissue:`807`: BF: fix shebang lines for scripts * :ghissue:`794`: RF: Allow setting the verbosity of the AffineRegistration while running it * :ghissue:`801`: TST: add Python 3.5 to travis-ci test matrix