dipy_labelsbundles

Usage

dipy_labelsbundles [-h] [–out_dir str] [–out_bundle str] streamline_files labels_files

Extract bundles using existing indices (labels)

Positional Arguments

streamline_files The path of streamline files where you want to recognize bundles. labels_files The path of model bundle files.

options:

-h, --help

show this help message and exit

Output Arguments(Optional)

--out_dir str

Output directory. (default current directory)

--out_bundle str

Recognized bundle in the space of the model bundle.

References

[Garyfallidis17]

Garyfallidis et al. Recognition of white matter bundles using local and global streamline-based registration and clustering, Neuroimage, 2017.

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.