Release notes for DIPY version 0.16#
GitHub stats for 2018/12/12 - 2019/03/10 (tag: 0.15.0)
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 14 authors contributed 361 commits.
Ariel Rokem
Bramsh Qamar
Clément Zotti
Eleftherios Garyfallidis
Francois Rheault
Gabriel Girard
Jean-Christophe Houde
Jon Haitz Legarreta Gorroño
Katrin Leinweber
Kesshi Jordan
Parichit Sharma
Serge Koudoro
Shreyas Fadnavis
Yijun Liu
We closed a total of 103 issues, 41 pull requests and 62 regular issues;
this is the full list (generated with the script
tools/github_stats.py):
Pull Requests (41):
PR #1755: Bundle Analysis and Linear mixed Models Workflows
PR #1748: [REBASED ] Symmetric Diffeomorphic registration workflow
PR #1714: DOC: Add Cython style guideline for DIPY.
PR #1726: IVIM MIX Model (MicroLearn)
PR #1753: BF: Fixes #1751, by adding a scale key-word arg to decfa
PR #1743: Horizon
PR #1749: [Fix] Tutorial syntax
PR #1739: IVIM Workflow
PR #1695: A few tractometry functions
PR #1741: [Fix] Pre-build : From relative to absolute import
PR #1742: [REBASED] Apply Transform Workflow
PR #1745: Adjust number of threads for SLR in Recobundles
PR #1746: [DOC] Add NIH to sponsor list
PR #1735: [Rebase] Affine Registration Workflow with Supporting Quality Metrics
PR #1738: [FIX] Python 3 compatibility for some tools script
PR #1740: [FIX] mapmri with cvxpy 1.0.15
PR #1730: [Fix] Cython syntax error
PR #1666: Remove the points added outside of a mask. Fix the related tests.
PR #1737: Doc Fix
PR #1733: Minor Doc Fix
PR #1732: MAIIncrement Python version for testing to 3.6
PR #1716: DOC: Add Imports section on package shorthands recommendations.
PR #1640: Workflows - Adding PFT, probabilistic, closestpeaks tracking
PR #1652: Switching tests to pytest
PR #1720: [WIP] DIPY Workshop link on current website
PR #1719: BF: Syntax fix example images not rendering
PR #1715: DOC: Avoid the bullet points being interpreted as quoted blocks.
PR #1706: BUG: Fix Cython one-liner non-trivial type declaration warnings.
PR #1705: BUG: Fix Numpy .random.random_integer deprecation warning.
PR #1704: DOC: Fix typo in linear_fascicle_evaluation.py script.
PR #1701: BUG: Fix Sphinx math notation documentation warnings.
PR #1707: BUG: Address numpy.matrix PendingDeprecation warnings.
PR #1703: BUG: Fix blank image being recorded at linear_fascicle_evaluation.py.
PR #1700: DOC: Use triple double-quoted strings for docstrings.
PR #1708: BF: Clip the values before passing to arccos, instead of fixing nans.
PR #1710: DOC: fix typo in instruction below sample snippet
PR #1702: BUG: Fix dipy.io.trackvis deprecation warnings.
PR #1697: Hyperlink DOIs to preferred resolver
PR #1696: Transfer release notes to a specific folder
PR #1690: Typo in release notes
PR #1693: Changed the GSoC conduction years
Issues (62):
#1757: NI Learn info from sensors designed to acseptible eeg format?
#1755: Bundle Analysis and Linear mixed Models Workflows
#1748: [REBASED ] Symmetric Diffeomorphic registration workflow
#1714: DOC: Add Cython style guideline for DIPY.
#1726: IVIM MIX Model (MicroLearn)
#1751: Scale values in decfa
#1753: BF: Fixes #1751, by adding a scale key-word arg to decfa
#1754: DeprecationWarning: This function is deprecated. Please call randint(0, 10000 + 1) instead C:UsersranjiAnaconda3libsite-packagesipykernel_launcher.py:14: DeprecationWarning: imsave is deprecated! imsave is deprecated in SciPy 1.0.0, and will be removed in 1.2.0. Use
imageio.imwriteinstead.#1743: Horizon
#1749: [Fix] Tutorial syntax
#1616: Implementing the Diffeomorphic registration
#1739: IVIM Workflow
#1695: A few tractometry functions
#1741: [Fix] Pre-build : From relative to absolute import
#1742: [REBASED] Apply Transform Workflow
#1745: Adjust number of threads for SLR in Recobundles
#1746: [DOC] Add NIH to sponsor list
#1605: Cleaned PR for Apply Transform Workflow to quickly register a set of moving NIFTI images using a given affine matrix.
#1735: [Rebase] Affine Registration Workflow with Supporting Quality Metrics
#1738: [FIX] Python 3 compatibility for some tools script
#1740: [FIX] mapmri with cvxpy 1.0.15
#1730: [Fix] Cython syntax error
#1661: Local Tracking - BinaryTissueClassifier - dropping the last point
#1666: Remove the points added outside of a mask. Fix the related tests.
#1737: Doc Fix
#1604: Cleaned PR for Affine Registration Workflow with Supporting Quality Metrics
#1734: Documentation Error
#1733: Minor Doc Fix
#1565: New warnings with PRE=1
#1732: MAIIncrement Python version for testing to 3.6
#1716: DOC: Add Imports section on package shorthands recommendations.
#1640: Workflows - Adding PFT, probabilistic, closestpeaks tracking
#1729: N3/N4 Bias correction?
#1652: Switching tests to pytest
#1280: Switch testing to pytest?
#1727: Upgrade Scipy for MIX framework?
#1723: Failure on
#1720: [WIP] DIPY Workshop link on current website
#1718: cannot import name window
#1719: BF: Syntax fix example images not rendering
#1717: cannot import packages of dipy.viz
#1715: DOC: Avoid the bullet points being interpreted as quoted blocks.
#1706: BUG: Fix Cython one-liner non-trivial type declaration warnings.
#1705: BUG: Fix Numpy .random.random_integer deprecation warning.
#1664: Deprecation warnings on testing
#1704: DOC: Fix typo in linear_fascicle_evaluation.py script.
#1701: BUG: Fix Sphinx math notation documentation warnings.
#1707: BUG: Address numpy.matrix PendingDeprecation warnings.
#1633: Blank png saved/displayed on documentation
#1703: BUG: Fix blank image being recorded at linear_fascicle_evaluation.py.
#1700: DOC: Use triple double-quoted strings for docstrings.
#1708: BF: Clip the values before passing to arccos, instead of fixing nans.
#1698: test failure in travis
#1710: DOC: fix typo in instruction below sample snippet
#1702: BUG: Fix dipy.io.trackvis deprecation warnings.
#1697: Hyperlink DOIs to preferred resolver
#1696: Transfer release notes to a specific folder
#1691: Doc folder for release notes
#1690: Typo in release notes
#1693: Changed the GSoC conduction years
#1692: Minor doc fix
#1632: Link broken on website