dipy_convert_tractogram

Usage

dipy_convert_tractogram [-h] [–reference str] [–pos_dtype str] [–offsets_dtype str] [–out_dir str] [–out_tractogram str] input_files [input_files …]

Converts tractogram between different formats.

Positional Arguments

input_files Any number of tractogram files

options:

-h, --help

show this help message and exit

--reference str

Reference anatomy for tck/vtk/fib/dpy file. support (.nii or .nii.gz).

--pos_dtype str

Data type of the tractogram points, used for vtk files.

--offsets_dtype str

Data type of the tractogram offsets, used for vtk files.

Output Arguments(Optional)

--out_dir str

Output directory. (default current directory)

--out_tractogram str

Name of the resulting tractogram

References

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.