General bibliography#
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Samuel R. Chamberlain, Adam Hampshire, Lara A. Menzies, Eleftherios Garyfallidis, Jon E. Grant, Brian L. Odlaug, Kevin Craig, Naomi Fineberg, and Barbara J. Sahakian. Reduced Brain White Matter Integrity in Trichotillomania: A Diffusion Tensor Imaging Study. Archives of General Psychiatry, 67(9):965–971, September 2010. URL: https://doi.org/10.1001/archgenpsychiatry.2010.109, doi:10.1001/archgenpsychiatry.2010.109.
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Bramsh Qamar Chandio and Eleftherios Garyfallidis. StND: Streamline-based Non-rigid partial-Deformation Tractography Registration. In Medical Imaging Meets NeurIPS Workshop. Online, December 2020.
Bramsh Qamar Chandio, Emanuele Olivetti, David Romero-Bascones, Jaroslaw Harezlak, and Eleftherios Garyfallidis. BundleWarp, streamline-based nonlinear registration of white matter tracts. bioRxiv, 2023. doi:https://doi.org/10.1101/2023.01.04.522802.
Bramsh Qamar Chandio, Shannon Leigh Risacher, Franco Pestilli, Daniel Bullock, Fang-Cheng Yeh, Serge Koudoro, Ariel Rokem, Jaroslaw Harezlak, and Eleftherios Garyfallidis. Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations. Scientific Reports, 10:17149, October 2020. URL: https://doi.org/10.1038/s41598-020-74054-4, doi:10.1038/s41598-020-74054-4.
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Hu Cheng, Sharlene Newman, Maryam Afzali, Shreyas Fadnavis, and Eleftherios Garyfallidis. Segmentation of the brain using direction-averaged signal of DWI images. Magnetic Resonance Imaging, 69:1–7, June 2020. URL: https://doi.org/10.1016/j.mri.2020.02.010, doi:10.1016/j.mri.2020.02.010.
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Shreyas Fadnavis, Marco Reisert, Hamza Farooq, Maryam Afzali, Cheng Hu, Bago Amirbekian, and Eleftherios Garyfallidis. MicroLearn: Framework for machine learning, reconstruction, optimization and microstructure modeling. In ISMRM 27th Annual Meeting & Exhibition SMRT 28th Annual Meeting. Montréal, Canada, 2019. International Society for Magnetic Resonance in Medicine (ISMRM).
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Eleftherios Garyfallidis, Matthew Brett, Bagrat Amirbekian, Chistopher Nguyen, Fang-Cheng Yeh, Emanuele Olivetti, Yaroslav Halchenko, and Ian Nimmo-Smith. Dipy - a novel software library for diffusion MR and tractography. In 17th annual meeting of the Organization for Human Brain Mapping, volume. Quebec City, Canada, June 2011. Organization for Human Brain Mapping (OHBM).
Eleftherios Garyfallidis, Matthew Brett, Bagrat Amirbekian, Ariel Rokem, Stefan Van Der Walt, Maxime Descoteaux, Ian Nimmo-Smith, and Dipy Contributors. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, February 2014. URL: https://doi.org/10.3389/fninf.2014.00008, doi:10.3389/fninf.2014.00008.
Eleftherios Garyfallidis, Matthew Brett, Marta M. Correia, Guy B. Williams, and Ian Nimmo-Smith. QuickBundles, a Method for Tractography Simplification. Frontiers in Neuroscience, 6():175, December 2012. URL: https://doi.org/10.3389/fnins.2012.00175, doi:10.3389/fnins.2012.00175.
Eleftherios Garyfallidis, Matthew Brett, and Ian Nimmo-Smith. Fast Dimensionality Reduction for Brain Tractography Clustering. In 16th Annual Meeting of the Organization for Human Brain Mapping, volume. Barcelona, Spain, June 2010. Organization for Human Brain Mapping (OHBM).
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