DIPY Workflows Interfaces

• Introduction to command line interfaces
  • References
• Downloading DIPY datasets
• Denoising
  • Denoising using Overcomplete Local PCA
  • Denoising using Marcenko-Pastur PCA
  • Denoising using NLMEANS
  • Overview of Denoising Methods
    • Diffusion
    • Structural
  • References
• Between-Volumes Motion Correction
  • Motion Correction
  • References
• Gibbs Unringing
  • Suppress Gibbs Oscillations
  • References
• Registration
  • Image Registration
  • Symmetric Diffeomorphic Registration
  • Apply a Transformation
  • Streamline-based Registration
  • References
• Reconstruction
  • Constrained Spherical Deconvolution (CSD)
  • Mean Apparent Propagator (MAP)-MRI
  • Diffusion Tensor Imaging (DTI)
  • Diffusion Kurtosis Imaging (DKI)
  • Constant Solid Angle (CSA)
  • Intravoxel Incoherent Motion (IVIM)
  • References
• Tracking
  • Local Fiber Tracking
    • EuDX Tracking
    • Deterministic Tracking
    • Probabilistic Tracking
    • Closest Peaks Tracking
  • Particle Filtering Tracking (PFT)
  • Overview of Fiber Tracking Methods
  • References
• BUndle ANalytics (BUAN) framework
  • Group Comparison of Bundle Profiles
  • Shape similarity of specific bundles across the populations
  • Reproducing results on larger dataset:
  • References
• White Matter Bundle Segmentation with RecoBundles
  • Streamline-Based Linear Registration
  • RecoBundles
  • References
• Nonrigid White Matter Bundle Registration with BundleWarp
  • Partially Deformable BundleWarp Registration
  • Fully Deformable BundleWarp Registration
  • References
• dMRI Visualization with Horizon
  • Visualize 3D Brain Image
  • Visualize 4D Brain Image
  • Visualize Brain Tractogram
  • Visualize Brain Surface