Release notes for DIPY version 0.12#
GitHub stats for 2016/02/21 - 2017/06/26 (tag: 0.11.0)
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 48 authors contributed 1491 commits.
Alexandre Gauvin
Antonio Ossa
Ariel Rokem
Bago Amirbekian
Bishakh Ghosh
David Reagan
Eleftherios Garyfallidis
Etienne St-Onge
Gabriel Girard
Gregory R. Lee
Jean-Christophe Houde
Jon Haitz Legarreta
Julio Villalon
Kesshi Jordan
Manu Tej Sharma
Marc-Alexandre Côté
Matthew Brett
Matthieu Dumont
Nil Goyette
Omar Ocegueda Gonzalez
Rafael Neto Henriques
Ranveer Aggarwal
Riddhish Bhalodia
Rutger Fick
Samuel St-Jean
Serge Koudoro
Shahnawaz Ahmed
Sourav Singh
Stephan Meesters
Stonge Etienne
Guillaume Theaud
Tingyi Wanyan
Tom Wright
Vibhatha Abeykoon
Yaroslav Halchenko
Eric Peterson
Sven Dorkenwald
theaverageguy
We closed a total of 511 issues, 169 pull requests and 342 regular issues;
this is the full list (generated with the script
tools/github_stats.py):
Pull Requests (169):
PR #1273: Release 0.12 doc fix
PR #1272: small correction for debugging purpose on nlmeans
PR #1269: Odf slicer
PR #1271: Viz tut update
PR #1268: Following up on #1243.
PR #1223: local PCA using SVD
PR #1270: Doc cleaning deprecation warning
PR #1267: Adding a decorator for skipping test if openmp is not available
PR #1090: Documentation for command line interfaces
PR #1243: Better fvtk.viz error when no VTK installed
PR #1263: Cast Streamline attrs to numpy ints, to avoid buffer mismatch.
PR #1254: Automate script installation
PR #1261: removing absolute path in tracking module
PR #1255: Fix missing documentation content
PR #1260: removing absolute path in reconst
PR #1241: Csa and csd reconstruction workflow rebased
PR #1250: DOC: Fix reconst_dki.py DKI example documentation typos.
PR #1244: TEST: Decrease precision of tests for dki micro model prediction
PR #1235: New hdf5 file format for saving PeaksAndMetrics objects
PR #1231: TST: Reduce precision requirement for test of tortuosity estimation.
PR #1233: Feature: Added environment override for dipy_home variable
PR #1234: BUG: Fix non-ASCII characters in reconst_dki.py example.
PR #1222: A lightweight UI for medical visualizations #5: 2D Circular Slider
PR #1228: RF: Use cython imports instead of relying on extern
PR #1227: BF: Use np.npy_intp instead of assuming long for ArraySequence attributes
PR #1226: DKI Microstructural model
PR #1229: RF: allow for scipy pre-release deprecations
PR #1225: Add one more multi b-value data-set
PR #1219: MRG:Data off dropbox
PR #1221: NF: Check multi b-value
PR #1212: Follow PEP8 in reconst (part 2)
PR #1217: Use integer division in reconst_gqi.py
PR #1205: A lightweight UI for medical visualizations #4: 2D Line Slider
PR #1166: RF: Use the average sigma in the mask.
PR #1216: Use integer division to avoid errors in indexing
PR #1214: DOC: add a clarification note to simplify_warp_funcion_3d
PR #1208: Follow PEP8 in reconst (part 1)
PR #1206: Revert #1204, and add a filter to suppress warnings.
PR #1196: MRG: Use dipy’s array comparisons for tests
PR #1204: Suppress warnings regarding one-dimensional arrays changes in scipy 0.18
PR #1199: A lightweight UI for medical visualizations #3: Changes to Event Handling
PR #1202: Use integer division to avoid errors in indexing
PR #1198: ENH: avoid log zero
PR #1201: Fix out of bounds point not being classified OUTSIDEIMAGE (binary cla…
PR #1115: Bayesian Tissue Classification
PR #1052: Conda install
PR #1183: A lightweight UI for medical visualizations #2: TextBox
PR #1186: MRG: use newer wheelhouse for installs
PR #1195: Make PeaksAndMetrics pickle-able
PR #1194: Use assert_arrays_equal when needed.
PR #1193: Deprecate the Accent colormap, in anticipation of changes in MPL 2.0
PR #1140: A lightweight UI for medical visualizations #1: Button
PR #1171: fix:dev: added numpy.int64 for my triangle array
PR #1123: Add the mask workflow
PR #1174: NF: added the repulsion 200 sphere.
PR #1177: BF: fix interpolation call with Numpy 1.12
PR #1162: Return S0 value for DTI fits
PR #1147: add this fix for newer version of pytables.
PR #1076: ENH: Add support for ArraySequence in length function
PR #1050: ENH: expand OpenMP utilities and move from denspeed.pyx to dipy.utils
PR #1082: Add documentation uploading script
PR #1153: Athena mapmri
PR #1159: TST - add tests for various affine matrices for local tracking
PR #1157: Replace get_affine with affine and get_header with header.
PR #1160: Add Shahnawaz to list of contributors.
PR #1158: BF: closing matplotlib plots for each file while running the examples
PR #1151: Define fmin() for Visual Studio
PR #1149: Change DKI_signal to dki_signal
PR #1137: Small fix to insure that fwDTI non-linear procedure does not crash
PR #942: NF: Added support to colorize each line points individually
PR #1141: Do not cover files related to benchmarks.
PR #1098: Adding custom interactor for visualisation
PR #1136: Update deprecated function.
PR #1113: TST: Test for invariance of model_params to splitting of the data.
PR #1134: Rebase of dipy/dipy#993
PR #1064: Faster dti odf
PR #1114: flexible grid to streamline affine generation and pathlength function
PR #1122: Add the reconst_dti workflow
PR #1132: Update .travis.yml and README.md
PR #1125: Intensity adjustment. Find a better upper bound for interpolating images.
PR #1130: Minor corrections for showing surfaces
PR #1092: Line-based target()
PR #1129: Fix 1127
PR #1034: Viz surfaces
PR #1060: Fast computation of Cross Correlation metric
PR #1124: Small fix in free water DTI model
PR #1058: IVIM
PR #1110: WIP : Ivim linear fitting
PR #1120: Fix 1119
PR #1075: Drop26
PR #835: NF: Free water tensor model
PR #1046: BF - peaks_from_model with nbr_processes <= 0
PR #1049: MAINT: minor cython cleanup in align/vector_fields.pyx
PR #1087: Base workflow enhancements + tests
PR #1112: DOC: Math rendering issue in SFM gallery example.
PR #1109: Changed default value of mni template
PR #1106: Including MNI Template 2009c in Fetcher
PR #1066: Adaptive Denoising
PR #1091: Modifications for building docs with python3
PR #1105: Import reload function from imp module explicitly for python3
PR #1102: MRG: add pytables to travis-ci, Py35 full test run
PR #1100: Fix for Python 3 in io.dpy
PR #1094: Updates to FBC measures documentation
PR #1059: Documentation to discourage misuse of GradientTable
PR #1063: Fixes #1061 : Changed all S0 to 1.0
PR #1089: BF: fix test error on Python 3
PR #1079: Return a generator from orient_by_roi
PR #1088: Restored the older implementation of nlmeans
PR #1080: DOC: TensorModel.__init__ docstring.
PR #828: Fiber to bundle coherence measures
PR #1072: DOC: Added a coverage badge to README.rst
PR #1025: PEP8: Fix pep8 in segment
PR #1077: DOC: update fibernavigator link
PR #1069: DOC: Small one – we need this additional line of white space to render.
PR #1068: Renamed test_shore for consistency
PR #1067: Generate b vectors using disperse_charges
PR #1065: improve OMP parallelization with scheduling
PR #1062: BF - fix CSD.predict to work with nd inputs.
PR #1056: Remove tracking interfaces
PR #1028: BF: Predict DKI with a volume of S0
PR #1041: NF - Add PMF Threshold to Tractography
PR #1039: Doc - fix definition of real_sph_harm functions
PR #1019: MRG: fix heavy dependency check; no numpy for setup
PR #1018: Fix: denspeed.pyx to give correct output for nlmeans
PR #1035: Fix for fetcher files in Windows
PR #974: Minor change in tools/github_stats.py
PR #1021: Added warning for VTK not installed
PR #1024: Documentation fix for reconst_dsid.py
PR #981: Fixes #979 : No figures in DKI example - Add new line after figure
PR #958: FIX: PEP8 in testing
PR #1005: FIX: Use absolute imports in io
PR #951: Contextual Enhancement update: fix SNR issue, fix reference
PR #1015: Fix progressbar of fetcher
PR #992: FIX: Update the import statements to use absolute import in core
PR #1003: FIX: Change the import statements in direction
PR #1004: FIX: Use absolute import in pkg_info
PR #1006: FIX: Use absolute import in utils and scratch
PR #1010: Absolute Imports in Viz
PR #929: Fix PEP8 in data
PR #941: BW: skimage.filter module name warning
PR #976: Fix PEP8 in sims and remove unnecessary imports
PR #956: FIX: PEP8 in reconst/test and reconst/benchmarks
PR #955: FIX: PEP8 in external
PR #952: FIX: PEP8 in tracking and tracking benchmarks/tests
PR #982: FIX: relative imports in dipy/align
PR #972: Fixes #901 : Added documentation for “step” in dti
PR #971: Add progress bar feature to dipy.data.fetcher
PR #989: copyright 2008-2016
PR #977: Relative import fix in dipy/align
PR #957: FIX: PEP8 in denoise
PR #959: FIX: PEP8 in utils
PR #967: Update index.rst correcting the date of release 0.11
PR #954: FIX: PEP8 in direction
PR #965: Fix typo
PR #948: Fix PEP8 in boots
PR #946: FIX: PEP8 for test_sumsqdiff and test_scalespace
PR #964: FIX: PEP8 in test_imaffine
PR #963: FIX: PEP8 in core
PR #947: FIX: PEP8 for test files
PR #897: PEP8
PR #926: Fix PEP8 in fixes
PR #937: BF : Clamping of the value of v in winding function
PR #907: DOC: switch to using mathjax for maths
PR #932: Fixes #931 : checks if nb_points=0
PR #927: Fix PEP8 in io and remove duplicate definition in test_bvectxt.py
PR #913: Fix pep8 in workflows
PR #935: Setup: go on to version 0.12 development.
PR #934: DOC: Update github stats for 0.11 as of today.
PR #933: Updating release dates
Issues (342):
#1273: Release 0.12 doc fix
#1272: small correction for debugging purpose on nlmeans
#1269: Odf slicer
#1143: Slice through ODF fields
#1271: Viz tut update
#1246: WIP: Replace widget with ui components in example.
#1268: Following up on #1243.
#1223: local PCA using SVD
#1265: Test failure on OSX in test_nlmeans_4d_3dsigma_and_threads
#1270: Doc cleaning deprecation warning
#1251: Slice through ODF fields - Rebased
#1267: Adding a decorator for skipping test if openmp is not available
#1090: Documentation for command line interfaces
#1243: Better fvtk.viz error when no VTK installed
#1238: Cryptic fvtk.viz error when no VTK installed
#1242: DKI microstructure model tests still fail intermittenly
#1252: Debug PR only - Odf slicer vtk tests (do not merge)
#1263: Cast Streamline attrs to numpy ints, to avoid buffer mismatch.
#1257: revamp piesno docstring
#978: Use absolute import in align
#1179: Automate workflow generation
#1253: Automate script installation for workflows
#1254: Automate script installation
#1261: removing absolute path in tracking module
#1001: Use absolute import in tracking
#1255: Fix missing documentation content
#1260: removing absolute path in reconst
#999: Use absolute import in reconst
#1258: Fix nlmeans indexing
#369: Add TESTs for resample
#1155: csa and csd reconstruction workflow
#1000: Use absolute import in segment, testing and tests
#1070: [Docs] Examples using deprecated function
#711: Update api_changes.rst for interp_rbf
#321: Median otsu figures in example don’t look good
#994: Use absolute import in dipy/core
#608: Customize at runtime the number of cores nlmeans is using
#865: PEP8 in test_imwarp
#591: Allow seed_from_mask to generate random seeds
#518: TODO: aniso2iso module will be completely removed in version 0.10.
#328: “incompatible” import of peaks_from_model in your recent publication
#1241: Csa and csd reconstruction workflow rebased
#1250: DOC: Fix reconst_dki.py DKI example documentation typos.
#1244: TEST: Decrease precision of tests for dki micro model prediction
#1235: New hdf5 file format for saving PeaksAndMetrics objects
#1231: TST: Reduce precision requirement for test of tortuosity estimation.
#1210: Switching branches in windows and pip install error
#1209: Move data files out of dropbox => persistent URL
#1233: Feature: Added environment override for dipy_home variable
#1234: BUG: Fix non-ASCII characters in reconst_dki.py example.
#1222: A lightweight UI for medical visualizations #5: 2D Circular Slider
#1185: unable to use fvtk.show after ubuntu 16.10 install
#1228: RF: Use cython imports instead of relying on extern
#909: Inconsistent output for values_from_volume
#1182: CSD vs CSA
#1211: dipy.data.read_bundles_2_subjects doesn’t fetch data as expected
#1227: BF: Use np.npy_intp instead of assuming long for ArraySequence attributes
#1027: (DO NOT MERGE THIS PR) NF: DKI microstructural model
#1226: DKI Microstructural model
#1229: RF: allow for scipy pre-release deprecations
#1225: Add one more multi b-value data-set
#1219: MRG:Data off dropbox
#1218: [Docs] Error while generating html
#1221: NF: Check multi b-value
#1212: Follow PEP8 in reconst (part 2)
#1217: Use integer division in reconst_gqi.py
#1205: A lightweight UI for medical visualizations #4: 2D Line Slider
#1166: RF: Use the average sigma in the mask.
#1216: Use integer division to avoid errors in indexing
#1215: [Docs] Error while building examples: tracking_quick_start.py
#1213: dipy.align.vector_fields.simplify_warp_function_3d: Wrong equation in docstring
#1214: DOC: add a clarification note to simplify_warp_funcion_3d
#1208: Follow PEP8 in reconst (part 1)
#1206: Revert #1204, and add a filter to suppress warnings.
#1196: MRG: Use dipy’s array comparisons for tests
#1191: Test failures for cluster code with current numpy master
#1207: Follow PEP8 in reconst
#1204: Suppress warnings regarding one-dimensional arrays changes in scipy 0.18
#1107: Dipy.align.reslice: either swallow the scipy warning or rework to avoid it
#1199: A lightweight UI for medical visualizations #3: Changes to Event Handling
#1200: [Docs] Error while generating docs
#1202: Use integer division to avoid errors in indexing
#1188: Colormap test errors for new matplotlib
#1187: Negative integer powers error with numpy 1.12
#1170: Importing vtk with dipy
#1086: ENH: avoid calling log() on zero-valued elements in anisotropic_power
#1198: ENH: avoid log zero
#1201: Fix out of bounds point not being classified OUTSIDEIMAGE (binary cla…
#1115: Bayesian Tissue Classification
#1052: Conda install
#1183: A lightweight UI for medical visualizations #2: TextBox
#1173: TST: Test on Python 3.6
#1186: MRG: use newer wheelhouse for installs
#1190: Pickle error for Python 3.6 and test_peaksFromModelParallel
#1195: Make PeaksAndMetrics pickle-able
#1194: Use assert_arrays_equal when needed.
#1193: Deprecate the Accent colormap, in anticipation of changes in MPL 2.0
#1189: Np1.12
#1140: A lightweight UI for medical visualizations #1: Button
#1022: Fixes #720 : Auto generate ipython notebooks
#1139: The shebang again! Python: bad interpreter: No such file or directory
#1171: fix:dev: added numpy.int64 for my triangle array
#1123: Add the mask workflow
#1174: NF: added the repulsion 200 sphere.
#1176: Dipy.tracking.local.interpolation.nearestneighbor_interpolate raises when used with Numpy 1.12
#1177: BF: fix interpolation call with Numpy 1.12
#1162: Return S0 value for DTI fits
#1142: pytables version and streamlines_format.py example
#1147: add this fix for newer version of pytables.
#1076: ENH: Add support for ArraySequence in length function
#1050: ENH: expand OpenMP utilities and move from denspeed.pyx to dipy.utils
#1082: Add documentation uploading script
#1153: Athena mapmri
#1097: Added to quantize_evecs: multiprocessing and v
#1159: TST - add tests for various affine matrices for local tracking
#1163: WIP: Combined contour function with slicer to use affine
#940: Drop python 2.6
#1040: SFM example using deprecated code
#1118: pip install dipy failing on my windows
#1119: Buildbots failing with workflow merge
#1127: Windows buildbot failures after ivim_linear merge
#1128: Support for non linear denoise?
#1138: A few broken builds
#1148: Actual S0 for DTI data
#1157: Replace get_affine with affine and get_header with header.
#1160: Add Shahnawaz to list of contributors.
#740: Improved mapmri implementation with laplacian regularization and new …
#1045: Allow affine ‘shear’ tolerance in LocalTracking
#1154: [Bug] connectivity matrix image in streamline_tools example
#1158: BF: closing matplotlib plots for each file while running the examples
#1151: Define fmin() for Visual Studio
#1145: DKI_signal should be dki_signal in dipy.sims.voxel
#1149: Change DKI_signal to dki_signal
#1137: Small fix to insure that fwDTI non-linear procedure does not crash
#827: Free Water Elimination DTI
#942: NF: Added support to colorize each line points individually
#1141: Do not cover files related to benchmarks.
#1098: Adding custom interactor for visualisation
#1136: Update deprecated function.
#1113: TST: Test for invariance of model_params to splitting of the data.
#1134: Rebase of dipy/dipy#993
#1064: Faster dti odf
#1114: flexible grid to streamline affine generation and pathlength function
#1122: Add the reconst_dti workflow
#1132: Update .travis.yml and README.md
#1051: ENH: use parallel processing in the cython code for CCMetric
#993: FIX: Use absolute imports in testing,tests and segment files
#673: WIP: Workflow for syn registration
#859: [WIP] Suppress warnings in tests
#983: PEP8 in sims #884
#984: PEP8 in reconst #881
#1009: Absolute Imports in Tracking
#1036: Estimate S0 from data (DTI)
#1125: Intensity adjustment. Find a better upper bound for interpolating images.
#1130: Minor corrections for showing surfaces
#1092: Line-based target()
#1129: Fix 1127
#1034: Viz surfaces
#394: Update documentation for VTK and Anaconda
#973: Minor change in tools/github_stats.py
#1060: Fast computation of Cross Correlation metric
#1124: Small fix in free water DTI model
#1058: IVIM
#1110: WIP : Ivim linear fitting
#1120: Fix 1119
#1121: Recons dti workflow
#1083: nlmeans problem
#1075: Drop26
#835: NF: Free water tensor model
#1046: BF - peaks_from_model with nbr_processes <= 0
#1049: MAINT: minor cython cleanup in align/vector_fields.pyx
#1087: Base workflow enhancements + tests
#1112: DOC: Math rendering issue in SFM gallery example.
#670: Tissue classification using MAP-MRF
#332: A sample nipype interface for fit_tensor
#1116: failing to build the docs: issue with io.BufferedIOBase
#1109: Changed default value of mni template
#1106: Including MNI Template 2009c in Fetcher
#1066: Adaptive Denoising
#351: Dipy.tracking.utils.target affine parameter is misleading
#1091: Modifications for building docs with python3
#912: Unable to build documentation with Python 3
#1105: Import reload function from imp module explicitly for python3
#1104: restore_dti.py example does not work in python3
#1102: MRG: add pytables to travis-ci, Py35 full test run
#1100: Fix for Python 3 in io.dpy
#1103: BF: This raises a warning on line 367 otherwise.
#1101: Test with optional dependencies (including pytables) on Python 3.
#1094: Updates to FBC measures documentation
#1059: Documentation to discourage misuse of GradientTable
#1061: Inconsistency in specifying S0 values in multi_tensor and single_tensor
#1063: Fixes #1061 : Changed all S0 to 1.0
#1089: BF: fix test error on Python 3
#1079: Return a generator from orient_by_roi
#1088: Restored the older implementation of nlmeans
#1080: DOC: TensorModel.__init__ docstring.
#1085: Enhanced workflows
#1081: mean_diffusivity from the reconst.dti module returns incorrect shape
#1031: improvements for denoise/denspeed.pyx
#828: Fiber to bundle coherence measures
#1072: DOC: Added a coverage badge to README.rst
#1071: report coverage and add a badge?
#1038: BF: Should fix #1037
#1078: Fetcher for ivim data, needs md5
#953: FIX: PEP8 for segment
#1025: PEP8: Fix pep8 in segment
#883: PEP8 in segment
#1077: DOC: update fibernavigator link
#1069: DOC: Small one – we need this additional line of white space to render.
#1068: Renamed test_shore for consistency
#1067: Generate b vectors using disperse_charges
#1011: Discrepancy with output of nlmeans.py
#1055: WIP: Ivim implementation
#1065: improve OMP parallelization with scheduling
#1062: BF - fix CSD.predict to work with nd inputs.
#1057: Workaround for dipy/dipy#852
#1037: tracking.interfaces imports SlowAdcOpdfModel, but it is not defined
#1056: Remove tracking interfaces
#813: Windows 64-bit error in segment.featurespeed.extract
#1054: Remove tracking interfaces
#1028: BF: Predict DKI with a volume of S0
#1041: NF - Add PMF Threshold to Tractography
#1039: Doc - fix definition of real_sph_harm functions
#1019: MRG: fix heavy dependency check; no numpy for setup
#1018: Fix: denspeed.pyx to give correct output for nlmeans
#1043: DO NOT MERGE: Add a test of local tracking, using data from dipy.data.
#899: SNR in contextual enhancement example
#991: Documentation footer has 2008-2015 mentioned.
#1008: [WIP] NF: Implementation of CHARMED model
#1030: Fetcher files not found on Windows
#1035: Fix for fetcher files in Windows
#1016: viz.fvtk has no attribute ‘ren’
#1033: Viz surfaces
#1032: Merge pull request #1 from nipy/master
#1029: Errors building Cython extensions on Python 3.5
#974: Minor change in tools/github_stats.py
#1002: Use absolute import in utils and scratch
#1014: Progress bar works only for some data
#1013: dipy.data.make_fetcher test fails with Python 3
#1020: Documentation does not mention Scipy as a dependency for VTK widgets.
#1023: display in dsi example is broken
#1021: Added warning for VTK not installed
#882: PEP8 in reconst tests/benchmarks
#888: PEP8 in tracking benchmarks/tests
#885: PEP8 in testing
#902: fix typo
#1024: Documentation fix for reconst_dsid.py
#979: No figures in DKI example
#981: Fixes #979 : No figures in DKI example - Add new line after figure
#958: FIX: PEP8 in testing
#1005: FIX: Use absolute imports in io
#997: Use absolute import in io
#675: Voxelwise stabilisation
#951: Contextual Enhancement update: fix SNR issue, fix reference
#1015: Fix progressbar of fetcher
#1012: TST: install the dipy.data tests.
#992: FIX: Update the import statements to use absolute import in core
#1003: FIX: Change the import statements in direction
#996: Use absolute import in dipy/direction
#1004: FIX: Use absolute import in pkg_info
#998: Use absolute import in dipy/pkg_info.py
#1006: FIX: Use absolute import in utils and scratch
#1010: Absolute Imports in Viz
#1007: Use absolute import in viz
#929: Fix PEP8 in data
#874: PEP8 in data
#980: Fix pep8 in reconst
#1017: Fixes #1016 : Raises VTK not installed
#877: PEP8 in external
#887: PEP8 in tracking
#941: BW: skimage.filter module name warning
#976: Fix PEP8 in sims and remove unnecessary imports
#884: PEP8 in sims
#956: FIX: PEP8 in reconst/test and reconst/benchmarks
#955: FIX: PEP8 in external
#952: FIX: PEP8 in tracking and tracking benchmarks/tests
#982: FIX: relative imports in dipy/align
#972: Fixes #901 : Added documentation for “step” in dti
#901: DTI step parameter not documented.
#995: Use absolute import in dipy/data/__init__.py
#344: Update citation page
#971: Add progress bar feature to dipy.data.fetcher
#970: Downloading data with dipy.data.fetcher does not show any progress bar
#986: “pip3 install dipy” in Installation for python3
#990: No figures in DKI example
#989: copyright 2008-2016
#988: doc/conf.py shows copyright 2008-2015. Should be 2016?
#975: Use absolute import in imaffine, imwarp, metrics
#517: TODO: Peaks to be removed from dipy.reconst in 0.10
#977: Relative import fix in dipy/align
#875: PEP8 in denoise
#957: FIX: PEP8 in denoise
#960: PEP8 in sims #884
#961: PEP8 in reconst #880
#962: PEP8 in reconst #881
#889: PEP8 in utils
#959: FIX: PEP8 in utils
#866: PEP8 in test_metrics
#867: PEP8 in test_parzenhist
#868: PEP8 in test_scalespace
#869: PEP8 in test_sumsqdiff
#870: PEP8 in test_transforms
#871: PEP8 in test_vector_fields
#864: PEP8 in test_imaffine
#967: Update index.rst correcting the date of release 0.11
#862: PEP8 in test_crosscorr
#873: PEP8 in core
#831: ACT tracking example gives weird streamlines
#876: PEP8 in direction
#954: FIX: PEP8 in direction
#965: Fix typo
#968: Use relative instead of absolute import
#948: Fix PEP8 in boots
#872: PEP8 in boots
#946: FIX: PEP8 for test_sumsqdiff and test_scalespace
#964: FIX: PEP8 in test_imaffine
#963: FIX: PEP8 in core
#966: fix typo
#947: FIX: PEP8 for test files
#920: STYLE:PEP8 for test_imaffine
#897: PEP8
#950: PEP8 fixed in reconst/tests and reconst/benchmarks
#949: Fixed Pep8 utils tracking testing denoise
#926: Fix PEP8 in fixes
#878: PEP8 in fixes
#939: Fixed PEP8 in utils, denoise , tracking and testing
#945: FIX: PEP8 in test_scalespace
#937: BF : Clamping of the value of v in winding function
#930: pep8 fix issue #896 - “continuation line over-indented for visual indent”
#943: BF: Removed unused code in slicer
#907: DOC: switch to using mathjax for maths
#931: dipy/tracking/streamlinespeed set_number_of_points crash when nb_points=0
#932: Fixes #931 : checks if nb_points=0
#927: Fix PEP8 in io and remove duplicate definition in test_bvectxt.py
#924: in dipy/io/tests/test_bvectxt.py function with same name is defined twice
#879: PEP8 in io
#913: Fix pep8 in workflows
#891: PEP8 in workflows
#938: PEP8 issues solved in utils, testing and denoise
#935: Setup: go on to version 0.12 development.
#934: DOC: Update github stats for 0.11 as of today.
#933: Updating release dates