Release notes for DIPY version 1.4.1#
GitHub stats for 2021/03/14 - 2021/05/05 (tag: 1.4.0)
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 11 authors contributed 153 commits.
Ariel Rokem
Bramsh Qamar Chandio
David Romero-Bascones
Eleftherios Garyfallidis
Etienne St-Onge
Felix Liu
Gabriel Girard
John Kruper
Nasim Anousheh
Serge Koudoro
Shreyas Fadnavis
We closed a total of 89 issues, 28 pull requests and 61 regular issues;
this is the full list (generated with the script
tools/github_stats.py):
Pull Requests (28):
PR #2367: [Upcoming] Release 1.4.1
PR #2387: added all examples of CST and updated AFQ file name
PR #2386: Adding CST_L back in Bundle Segmentation Tutorial
PR #2375: Expanding Bundle Segmentation Tutorial
PR #2382: Updated docs for using P2S optimally
PR #2385: RF: Standardize the argument name for the number of threads/cores
PR #2384: RF - Removed deprecated tracking code
PR #2351: Updating Vec2vec_rotmat to deal with numerical issues
PR #2381: Adds the NIPY code of conduct to our repo.
PR #2371: [Fix] Add “None” options in the CLIs
PR #2352: RF: configure num_threads==-1 as the value to use all cores
PR #2373: [FIX] warning if not the same number of points
PR #2372: Expand patch radius if input is int
PR #2348: RF: Use new name for this function.
PR #2365: [DOC]: Change defaults in Patch2Self example
PR #2349: [ENH] Allow for other statistics, like median, in afq_profile
PR #2350: [FIX] Use npy_intp variables instead of int and size_t to iterate over numpy arrays
PR #2346: [MNT] Update and fix Cython warnings and use cnp.PyArray_DATA wherever possible
PR #2347: Replacing Data in NLMeans Tutorial
PR #2340: [FIX] reactivate codecov
PR #2344: [FIX] Tractogram Header in RecoBundles Tutorial
PR #2339: [FIX] Cleanup deprecated np.float, np.bool, np.int
PR #1648: Mesh seeding (surface)
PR #2337: BF: Change patch2self defaults.
PR #2333: Add __str__ to GradientTable
PR #2335: RF: Replaces deprecated basis by its new name.
PR #2332: [FIX] fix tests for all new deprecated functions
Issues (61):
#2375: Expanding Bundle Segmentation Tutorial
#1973: Recobundles documentation
#2382: Updated docs for using P2S optimally
#2385: RF: Standardize the argument name for the number of threads/cores
#2377: RF: standardize the argument name for the number of threads/cores
#2384: RF - Removed deprecated tracking code
#2351: Updating Vec2vec_rotmat to deal with numerical issues
#2381: Adds the NIPY code of conduct to our repo.
#2380: Community and governance
#2371: [Fix] Add “None” options in the CLIs
#2300: NF: Add “None” options in the CLIs
#2352: RF: configure num_threads==-1 as the value to use all cores
#2373: [FIX] warning if not the same number of points
#2320: RecoBundles distances
#2372: Expand patch radius if input is int
#2341: Allow use of all threads in the gibbs ringing workflow
#2348: RF: Use new name for this function.
#2353: How to create tractogram from a multi-shell data for RecoBundles
#1302: [DOC] cython (pyx) files are not parsed
#366: Some doc missing
#2365: [DOC]: Change defaults in Patch2Self example
#1672: Dipy Segmentation fault when visualizing
#1444: Move general registration tools into own package?
#562: Multiprocessing the tensor reconstruction
#13: Coordinate maps stuff
#2324: Dipy for VR/AR
#2345: Saving and/or importing nonlinear warps
#2349: [ENH] Allow for other statistics, like median, in afq_profile
#2350: [FIX] Use npy_intp variables instead of int and size_t to iterate over numpy arrays
#423: Use npy_intp variables instead of int and size_t to iterate over numpy arrays
#837: Should we enforce float32 in tractography results?
#636: Get a standard interface for the functions using the noise variance
#861: open mp defaults to one core, is that a good idea?
#2346: [MNT] Update and fix Cython warnings and use cnp.PyArray_DATA wherever possible
#1895: Cython warnings
#545: Use cnp.PyArray_DATA wherever possible
#2347: Replacing Data in NLMeans Tutorial
#1847: Replacing Data in NLMeans Tutorial
#2340: [FIX] reactivate codecov
#1872: Did we lose our coverage reporting?
#1646: Fetcher should not be under coverage
#1635: Track from mesh
#2344: [FIX] Tractogram Header in RecoBundles Tutorial
#2309: Tractogram Header in RecoBundles Tutorial
#2334: Aphysical signal after running patch2self
#1873: ERROR while import data
#2343: Missing Python 3.9 wheels
#1996: Documentation not being rendered correctly
#2311: Accuracy of DKI measures
#2274: DKI metrics’ accuracy
#2339: [FIX] Cleanup deprecated np.float, np.bool, np.int
#1648: Mesh seeding (surface)
#1675: WIP: Integer indices
#2316: TranslationTransform2D Exact X-Y Shift
#2337: BF: Change patch2self defaults.
#2333: Add __str__ to GradientTable
#2331: gtab.info does not print anything
#2335: RF: Replaces deprecated basis by its new name.
#2332: [FIX] fix tests for all new deprecated functions