Documentation

Contents:

• What is DIPY?
• Mission statement
• Installation
  • Installing a release
  • Support
  • Installing from source
• Examples
  • A note about the examples
  • Quick Start
  • Preprocessing
  • Reconstruction
  • Contextual enhancement
  • Fiber tracking
  • Fiber tracking evaluation
  • Streamline analysis and connectivity
  • Registration
  • Segmentation
  • Simulations
  • Multiprocessing
  • File Formats
  • Visualization
  • Workflows
• Frequently Asked Questions
  • Theoretical
  • Practical
• Developers
• Publications
  • A note on citing our work
• DIPY development
  • Introduction
  • Working with DIPY source code
  • A guide to making a DIPY release
  • Commit message codes
  • DIPY Coding Style Guideline
  • Keeping code compatible with Pythons 2 and 3
• Indices and tables
• Theory and concepts
  • Spherical coordinates
  • Spherical Harmonic bases
• API Reference
  • dipy
  • __config__
  • align
  • boots
  • core
  • data
  • denoise
  • direction
  • io
  • reconst
  • segment
  • sims
  • stats
  • tracking
  • viz
  • workflows
• Command Line Utilities Reference
  • dipy_fit_dti
  • dipy_recobundles
  • dipy_fit_csa
  • dipy_slr
  • dipy_ba
  • dipy_fit_dki
  • dipy_lmm
  • dipy_median_otsu
  • dipy_nlmeans
  • dipy_horizon
  • dipy_fit_mapmri
  • dipy_mask
  • dipy_align_syn
  • dipy_align_affine
  • dipy_info
  • dipy_fit_csd
  • dipy_reslice
  • dipy_track_pft
  • dipy_apply_transform
  • dipy_fetch
  • dipy_track_local
  • dipy_labelsbundles
  • dipy_snr_in_cc
  • dipy_fit_ivim
• API changes
  • DIPY 1.0 changes
  • DIPY 0.16 Changes
  • DIPY 0.15 Changes
  • DIPY 0.14 Changes
  • DIPY 0.13 Changes
  • DIPY 0.12 Changes
  • DIPY 0.10 Changes
  • DIPY 0.9 Changes
  • DIPY 0.8 Changes
  • Changes between 0.7.1 and 0.6

Indices and tables

• Index

• Module Index

• Search Page