dipy_correct_motion

Usage

dipy_correct_motion [OPTIONS] input_files bvalues_files bvectors_files

Input Parameters

• input_files

  Path to the input volumes. This path may contain wildcards to process multiple inputs at once.

• bvalues_files

  Path to the bvalues files. This path may contain wildcards to use multiple bvalues files at once.

• bvectors_files

  Path to the bvectors files. This path may contain wildcards to use multiple bvectors files at once.

General Options

• --b0_threshold

  Threshold used to find b0 volumes.

• --bvecs_tol

  Threshold used to check that norm(bvec) = 1 +/- bvecs_tol b-vectors are unit vectors

Output Options

• --out_dir

  Directory to save the transformed image and the affine matrix

  (default current directory).

• --out_moved

  Name for the saved transformed image.

• --out_affine

  Name for the saved affine matrix.

References

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.