dipy_tensor2pam#

Synopsis#

Convert multiple tensor files(evals, evecs) to pam5 files.

Usage#

dipy_tensor2pam [OPTIONS] evals_files evecs_files

Input Parameters#

  • evals_files

    Path to the input eigen values volumes. This path may contain wildcards to process multiple inputs at once.

  • evecs_files

    Path to the input eigen vectors volumes. This path may contain wildcards to process multiple inputs at once.

General Options#

  • --sphere_files

    Path to the input sphere vertices. This path may contain wildcards to process multiple inputs at once. If it is not define, default_sphere option will be used.

  • --default_sphere_name

    Specify default sphere to use for spherical harmonics representation. This option can be superseded by sphere_files option. Possible options: [‘symmetric362’, ‘symmetric642’, ‘symmetric724’, ‘repulsion724’, ‘repulsion100’, ‘repulsion200’].

Output Options#

  • --out_dir

    Output directory (default input file directory).

  • --out_pam

    Name of the peaks volume to be saved.

References#

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.

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