dipy_concatenate_tractograms#

Synopsis#

Concatenate multiple tractograms into one.

Usage#

dipy_concatenate_tractograms [OPTIONS] tractogram_list

Input Parameters#

  • tractogram_list

    The stateful tractogram filenames to concatenate

General Options#

  • --reference

    Reference anatomy for tck/vtk/fib/dpy file. support (.nii or .nii.gz). (default: None)

  • --delete_dpv

    Delete dpv keys that do not exist in all the provided TrxFiles (default: False)

  • --delete_dps

    Delete dps keys that do not exist in all the provided TrxFile (default: False)

  • --delete_groups

    Delete all the groups that currently exist in the TrxFiles (default: False)

  • --check_space_attributes

    Verify that dimensions and size of data are similar between all the TrxFiles (default: True)

  • --preallocation

    Preallocated TrxFile has already been generated and is the first element in trx_list (Note: delete_groups must be set to True as well) (default: False)

Output Options#

  • --out_dir

    Output directory. (default: current directory)

  • --out_extension

    Extension of the resulting tractogram (default: trx)

  • --out_tractogram

    Name of the resulting tractogram (default: concatenated_tractogram)

References#

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.

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