dipy_pam2nifti#
Synopsis#
Convert pam5 files to multiple nifti files.
Usage#
dipy_pam2nifti [OPTIONS] pam_files
Input Parameters#
pam_files
Path to the input peaks volumes. This path may contain wildcards to process multiple inputs at once.
Output Options#
--out_dir
Output directory (default input file directory). (default: current directory)
--out_peaks_dir
Name of the peaks directions volume to be saved. (default: peaks_dirs.nii.gz)
--out_peaks_values
Name of the peaks values volume to be saved. (default: peaks_values.nii.gz)
--out_peaks_indices
Name of the peaks indices volume to be saved. (default: peaks_indices.nii.gz)
--out_shm
Name of the spherical harmonics volume to be saved. (default: shm.nii.gz)
--out_gfa
Generalized FA volume name to be saved. (default: gfa.nii.gz)
--out_sphere
Sphere vertices name to be saved. (default: sphere.txt)
--out_b
Name of the B Matrix to be saved. (default: B.nii.gz)
--out_qa
Name of the Quantitative Anisotropy file to be saved. (default: qa.nii.gz)
References#
Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.