dipy_info

Usage

dipy_info [-h] [–b0_threshold float] [–bvecs_tol float] [–bshell_thr float] [–reference str] input_files [input_files …]

Provides useful information about different files used in medical imaging. Any number of input files can be provided. The program identifies the type of file by its extension.

Positional Arguments

input_files Any number of Nifti1, bvals or bvecs files.

options:

-h, --help

show this help message and exit

--b0_threshold float

Threshold used to find b0 volumes.

--bvecs_tol float

Threshold used to check that norm(bvec) = 1 +/- bvecs_tol b-vectors are unit vectors.

--bshell_thr float

Threshold for distinguishing b-values in different shells.

--reference str

Reference anatomy for tck/vtk/fib/dpy file. support (.nii or .nii.gz).

References

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.