dipy_info#

Synopsis#

Provides useful information about different files used in medical imaging. Any number of input files can be provided. The program identifies the type of file by its extension.

Usage#

dipy_info [OPTIONS] input_files

Input Parameters#

  • input_files

    Any number of NIfTI, bvals, bvecs or tractography data files.

General Options#

  • --b0_threshold

    Threshold used to find b0 volumes. (default: 50)

  • --bvecs_tol

    Threshold used to check that \(norm( ext{bvec}) = 1 \pm ext{bvecs_tol}\) b-vectors are unit vectors. (default: 0.01)

  • --bshell_thr

    Threshold for distinguishing b-values in different shells. (default: 100)

  • --reference

    Reference anatomy for *.tck, *.vtk/*.vtp, *.fib, and *.dpy tractography files. (default: None)

References#

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.

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