dipy_evac_plus

Usage

dipy_evac_plus [-h] [–save_masked] [–out_dir str] [–out_mask str] [–out_masked str] input_files

Extract brain using EVAC+.

Positional Arguments

input_files Path to the input volumes. This path may contain wildcards to process multiple inputs at once.

options:

-h, --help

show this help message and exit

--save_masked

Save mask.

Output Arguments(Optional)

--out_dir str

Output directory. (default current directory)

--out_mask str

Name of the mask volume to be saved.

--out_masked str

Name of the masked volume to be saved.

References

[Park2022]

Park, J.S., Fadnavis, S., & Garyfallidis, E. (2022).EVAC+: Multi-scale V-net with Deep FeatureCRF Layers for Brain Extraction.

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.