dipy_correct_motion#

Usage#

dipy_correct_motion [OPTIONS] input_files bvalues_files bvectors_files

Input Parameters#

  • input_files

    Path to the input volumes. This path may contain wildcards to process multiple inputs at once.

  • bvalues_files

    Path to the bvalues files. This path may contain wildcards to use multiple bvalues files at once.

  • bvectors_files

    Path to the bvectors files. This path may contain wildcards to use multiple bvectors files at once.

General Options#

  • --b0_threshold

    Threshold used to find b0 volumes. (default: 50)

  • --bvecs_tol

    Threshold used to check that norm(bvec) = 1 +/- bvecs_tol b-vectors are unit vectors (default: 0.01)

Output Options#

  • --out_dir

    Directory to save the transformed image and the affine matrix. (default: current directory)

  • --out_moved

    Name for the saved transformed image. (default: moved.nii.gz)

  • --out_affine

    Name for the saved affine matrix. (default: affine.txt)

References#

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.

On this page