Fiber Tracking#

Tractography methods available in DIPY.#

Method

Local vs. Global

Deterministic vs. Probabilistic

References

Local deterministic (EuDX)

Local

Deterministic

Garyfallidis [Gar12]

Local probabilistic

Local

Probabilistic

Behrens et al. [BWMJ+03], Behrens et al. [BJBJ+07]

Bootstrap tracking

Local

Probabilistic

Berman et al. [BCM+08]

Particle Filtering Tractography (PFT)

Local

Deterministic/Probabilistic

Girard et al. [GWDD14]

Parallel Transport Tractography (PTT)

Local

Deterministic

Aydogan and Shi [AS47]

Surface seeding for tractography

Surface seeding for tractography

Parallel Transport Tractography

Parallel Transport Tractography

An introduction to the Deterministic Tractography

An introduction to the Deterministic Tractography

Bootstrap and Closest Peak Direction Getters Example

Bootstrap and Closest Peak Direction Getters Example

Tracking with Robust Unbiased Model-BAsed Spherical Deconvolution (RUMBA-SD)

Tracking with Robust Unbiased Model-BAsed Spherical Deconvolution (RUMBA-SD)

Tracking with the Sparse Fascicle Model

Tracking with the Sparse Fascicle Model

Introduction to Basic Tracking

Introduction to Basic Tracking

Particle Filtering Tractography

Particle Filtering Tractography

An introduction to the Probabilistic Tractography

An introduction to the Probabilistic Tractography

Linear fascicle evaluation (LiFE)

Linear fascicle evaluation (LiFE)

Using Various Stopping Criterion for Tractography

Using Various Stopping Criterion for Tractography